reinit the tree, so we can have metadata

6 files changed, 214 insertions, 0 deletions

diff --git a/sci-mathematics/jags/Manifest b/sci-mathematics/jags/Manifest
new file mode 100644
index 000000000000..5e782f9f6412
--- /dev/null
+++ b/sci-mathematics/jags/Manifest
@@ -0,0 +1,11 @@
+DIST JAGS-3.4.0.tar.gz 1677450 SHA256 2beaa9a2672c2c95efc55ffa4c8b597a872f20232373daebd17ad539d3d7d82b SHA512 7a330ea41eab63b23d8ae3622c6920f0dc3dba653a18256957b9b862bb86b746ff706e9e9bf3f806524250b439161a6df4ad05af682354073f9b0074f9825896 WHIRLPOOL 48f2bf92f80ea0558697701320e142a61b3eb5cfefe234973a6a189096b7887ec5ea829f8f6183bf9ad4a0f6fb07d769c710b721ec1e211772cbeaea0187c8e2
+DIST JAGS-4.0.0.tar.gz 1880476 SHA256 a1d572269029d90d4e8b25757fd7ae9678994bd682937ec505ddcf06185d2c4c SHA512 bbe4f4600dff0fc1db6f8548b8d386ea804174d69788646681de6d006a0e0ab018fb01257b5737f871d10c8b59865950fb91b6a9cad5d1e6addc415004c6f82c WHIRLPOOL d1f2ad15834252c63300259c789f69ca0fa008d0c2008d504db2c394642f7a63180baae76bc272a33a92c83addc373fd9ce026063ea74b40397ac902c2272aed
+DIST JAGS-4.1.0.tar.gz 1872634 SHA256 45ecf31b5b2127620a79875745b8ea4203ca2430a8b3625f5e80adc897cdf522 SHA512 76b52764e57e6c4450cc52c7c7c3de384f93bd6e57d8b88f1863b7c329bdd2ec39834902c223d433d263bcf29362b958807a9cb96b9066d4f75832b366339fd8 WHIRLPOOL b0187c02a971ccc733c34aa2e4f8e1ed32d1c767d97fb667034cd6035c08f63c2a6c014dcb5d5dd7ed080fdc9fae34be7bf002d0d631a6a454b849cf7c3cec67
+DIST JAGS-4.2.0.tar.gz 1875538 SHA256 af3e9d2896d3e712f99e2a0c81091c6b08f096650af6aa9d0c631c0790409cf7 SHA512 316483cd1a879c70c9b8ad6f23665196b95b9745da3924a47e14f4b0fd7c1abf9237575561cb31044623594360b6e991de68e1d9746baedeb285c65b77baada8 WHIRLPOOL 84e13b5c581cb740a25bd94d95049d6e8830e3b9403b29b188d0ab1ec552e99015620fa93f0e6da85ce293db3bf8b07f1d763e48f6d7cef745c9d9a424ea637c
+EBUILD jags-3.4.0.ebuild 977 SHA256 2e9d464defabdccd73dde0cce5ad8d9f105a3077cae44d1108a1dbd12a849ba2 SHA512 129dfdb423688686fd0b52f02b6934204a0ac9cb140427e3ba0bf4028ac8d4c6a3e50179e38a08f7533842d5a6e281a2f97693a0df9857ab82980d730697b4ac WHIRLPOOL e7abac4c6e989b9b4fbac4c388075a0b6fbe61982b572cf9efa9a22b1405bfdad93b16fe871fa18795a814ddcd41e3ae5d4a92ffaa590cf33ff74fbfb54a7a33
+EBUILD jags-4.0.0.ebuild 974 SHA256 daecda92ae9aeaa90b1939aba619b43e50b2b1a33eb2b3f4c6f26a8b126b2652 SHA512 962d8374060fc4de2661cf22926e2f31f7fe2b7b24df767e49815f115b45355cd0f1970785121f5d97154c3ae07ae5722b9ca00b13ed6e6860085e936f5191c1 WHIRLPOOL bbc762419c8e2b61f4480124deb19d846564afefbe67acfdaa31d2d9517cf2a67f3f23508e46ec632c57a73f53738ab7160689a248c3ad94283b69f0285f5565
+EBUILD jags-4.1.0.ebuild 885 SHA256 6fec2e5b31a1fdb9d87413bd8b47204db9394c25d200f0682742afd28945e7f6 SHA512 cfae8a6a14df0c226fcf42a56b281d9aa1c298e169b25d706e33f89318c6b08c1a9fb335879ceb5ae879e6139e6900724c91b325200a1f1908cab9ea8ed441a0 WHIRLPOOL 4033276ea954a98a45b679f269eff93dc3fbd1b94ee81e1f471e6764096d868401d25be8aa2ce49ffecfb851b2fc7df9b47d402c54b7a1b94c169a4dafa946ce
+EBUILD jags-4.2.0.ebuild 883 SHA256 fb758b4c833cc8597731c6151cb8e5887a90df557fcc1f9ca941de08e5d6af20 SHA512 96182242c5d7b049a808b3396625b2235cb30923fa77ede74cf0a2117b469ea0d1f339920f6ea122ac868c5704c77fd9fd784ea8c8805a21a7d733fbd34441bb WHIRLPOOL d625afdee494836234b8026e1136c96ec3934bcafd96757eafb6e4bdd40165d28137182a59fe5ea032003e87f8bfb1778087d111915be6a4f907d83bfbccc967
+MISC ChangeLog 3364 SHA256 bd181d4d78026160e100e5776be54dd17b169a05fe4718bddfea57c51a60509d SHA512 f6f485540c5d9797627fcbc28c5a1f560f1d7172b8ab8612fc0a1522f5185687cbe4f1d159ae7cd37e20256459c5f93ff4a38d78fa5e84e28e12868e3ea4ae1f WHIRLPOOL 14b65f6d82bd241d3afe9f703255aa2c6bf3169e520534e60e3f11983e04d5dd340282fa9810620113d9b1f9b01f4a216f7ef3565be236da7261fa0b65d37bd4
+MISC ChangeLog-2015 2622 SHA256 c9791b23299a7ec79040216f9ad658acd88e87af8af99c684128fdbc130f2203 SHA512 fb1ddcabf2dc73340f12bb6b40126aa60ba6c1961d2219a87b9005a7c7bac0ebc39c0013c7f9c188a064e43eab467d43334ccb0c989b60c7186fd4a2f86f6eef WHIRLPOOL 39b4efb4b474404f7d31ecd2a402afec4948ba148a43aac36334b01f4ce7d77db2d2d29a5a3a7be8cb6ad271a05a0e2e1569f266a6d3f99a83c4a895c96af72b
+MISC metadata.xml 862 SHA256 079ae87016ad150693389b962d6bbb83d70918805168e1adfbbe6fd6aeae945a SHA512 86f27a081286b51ba645006d3c65ec43d69aa4e15218bac97730295e2ebd1cab67c592f1c7fefdbdd9b959b68e54eaf358173f7d599cb1ab5ff13dea7eef3705 WHIRLPOOL e5bce84891d4ea260adccec1e4f7a1163d5aff07494f09cf84365148fbeaa94758c5f12c90c2dbe411e19a363b896b5c64cc09b3925867afa1547bd11b7df651
diff --git a/sci-mathematics/jags/jags-3.4.0.ebuild b/sci-mathematics/jags/jags-3.4.0.ebuild
new file mode 100644
index 000000000000..b7217d8d3027
--- /dev/null
+++ b/sci-mathematics/jags/jags-3.4.0.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit autotools-utils toolchain-funcs
+
+MYP="JAGS-${PV}"
+
+DESCRIPTION="Just Another Gibbs Sampler for Bayesian MCMC simulation"
+HOMEPAGE="http://mcmc-jags.sourceforge.net/"
+SRC_URI="mirror://sourceforge/project/mcmc-jags/JAGS/3.x/Source/${MYP}.tar.gz"
+LICENSE="GPL-2"
+IUSE="doc"
+
+SLOT="0"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+
+RDEPEND="
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? (
+		virtual/latex-base
+		dev-texlive/texlive-latexextra
+		)"
+
+S="${WORKDIR}/${MYP}"
+
+src_configure() {
+	local myeconfargs=(
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)"
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)"
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile all $(use doc && echo docs)
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc "${BUILD_DIR}"/doc/manual/*.pdf
+}
diff --git a/sci-mathematics/jags/jags-4.0.0.ebuild b/sci-mathematics/jags/jags-4.0.0.ebuild
new file mode 100644
index 000000000000..5ad4ed026ac1
--- /dev/null
+++ b/sci-mathematics/jags/jags-4.0.0.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit autotools-utils toolchain-funcs
+
+MYP="JAGS-${PV}"
+
+DESCRIPTION="Just Another Gibbs Sampler for Bayesian MCMC simulation"
+HOMEPAGE="http://mcmc-jags.sourceforge.net/"
+SRC_URI="mirror://sourceforge/project/mcmc-jags/JAGS/4.x/Source/${MYP}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+
+RDEPEND="
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? (
+		virtual/latex-base
+		dev-texlive/texlive-latexextra
+	)"
+
+S="${WORKDIR}/${MYP}"
+
+src_configure() {
+	local myeconfargs=(
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)"
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)"
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile all $(usex doc docs "")
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc "${BUILD_DIR}"/doc/manual/*.pdf
+}
diff --git a/sci-mathematics/jags/jags-4.1.0.ebuild b/sci-mathematics/jags/jags-4.1.0.ebuild
new file mode 100644
index 000000000000..e5ebc8c33151
--- /dev/null
+++ b/sci-mathematics/jags/jags-4.1.0.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit eutils toolchain-funcs
+
+MYP="JAGS-${PV}"
+
+DESCRIPTION="Just Another Gibbs Sampler for Bayesian MCMC simulation"
+HOMEPAGE="http://mcmc-jags.sourceforge.net/"
+SRC_URI="mirror://sourceforge/project/mcmc-jags/JAGS/4.x/Source/${MYP}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+
+RDEPEND="
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? (
+		virtual/latex-base
+		dev-texlive/texlive-latexextra
+	)"
+
+S="${WORKDIR}/${MYP}"
+
+src_configure() {
+	econf \
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)"
+}
+
+src_compile() {
+	emake all $(usex doc docs "")
+}
+
+src_install() {
+	default
+	use doc && dodoc doc/manual/*.pdf
+	prune_libtool_files
+}
diff --git a/sci-mathematics/jags/jags-4.2.0.ebuild b/sci-mathematics/jags/jags-4.2.0.ebuild
new file mode 100644
index 000000000000..0ff7b08efd9f
--- /dev/null
+++ b/sci-mathematics/jags/jags-4.2.0.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit eutils toolchain-funcs
+
+MYP="JAGS-${PV}"
+
+DESCRIPTION="Just Another Gibbs Sampler for Bayesian MCMC simulation"
+HOMEPAGE="http://mcmc-jags.sourceforge.net/"
+SRC_URI="mirror://sourceforge/project/mcmc-jags/JAGS/4.x/Source/${MYP}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+
+RDEPEND="
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? (
+		virtual/latex-base
+		dev-texlive/texlive-latexextra
+	)"
+
+S="${WORKDIR}/${MYP}"
+
+src_configure() {
+	econf \
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)"
+}
+
+src_compile() {
+	emake all $(usex doc docs "")
+}
+
+src_install() {
+	default
+	use doc && dodoc doc/manual/*.pdf
+	prune_libtool_files
+}
diff --git a/sci-mathematics/jags/metadata.xml b/sci-mathematics/jags/metadata.xml
new file mode 100644
index 000000000000..ff35c78e124a
--- /dev/null
+++ b/sci-mathematics/jags/metadata.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-mathematics@gentoo.org</email>
+    <name>Gentoo Mathematics Project</name>
+  </maintainer>
+  <longdescription lang="en">
+  JAGS is Just Another Gibbs Sampler. It is a program for analysis of
+  Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC)
+  simulation not wholly unlike BUGS.
+  JAGS was written with three aims in mind:
+  * To have an engine for the BUGS language that runs on Unix
+  * To be extensible, allowing users to write their own functions,
+    distributions and samplers.
+  * To be a plaftorm for experimentation with ideas in Bayesian modelling
+</longdescription>
+  <upstream>
+    <remote-id type="sourceforge">mcmc-jags</remote-id>
+  </upstream>
+</pkgmetadata>