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-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>haskell@gentoo.org</email>
- <name>Gentoo Haskell</name>
- </maintainer>
- <longdescription>
- This is a collection of data structures and algorithms
- useful for building bioinformatics-related tools
- and utilities.
-
- Current list of features includes: a Sequence data type supporting
- protein and nucleotide sequences and conversion between them. As of version
- 0.4, different kinds of sequence have different types. Support for quality
- data, reading and writing Fasta formatted files, reading TwoBit and
- phd formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support
- for doing alignments - including dynamic adjustment of scores based on sequence quality.
- Also Blast output parsing. Partly implemented single linkage clustering, and
- multiple alignment. Reading Gene Ontology (GO) annotations (GOA) and
- definitions\/hierarchy.
-
- The Darcs repository is at: &lt;http://malde.org/~ketil/biohaskell/biolib&gt;.
- </longdescription>
-</pkgmetadata>