diff options
Diffstat (limited to 'dev-haskell/bio')
| -rw-r--r-- | dev-haskell/bio/Manifest | 4 | ||||
| -rw-r--r-- | dev-haskell/bio/bio-0.5.3-r2.ebuild | 64 | ||||
| -rw-r--r-- | dev-haskell/bio/files/bio-0.5.3-ghc-7.10.patch | 7 | ||||
| -rw-r--r-- | dev-haskell/bio/metadata.xml | 25 |
4 files changed, 0 insertions, 100 deletions
diff --git a/dev-haskell/bio/Manifest b/dev-haskell/bio/Manifest deleted file mode 100644 index a0aa4767a756..000000000000 --- a/dev-haskell/bio/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX bio-0.5.3-ghc-7.10.patch 266 BLAKE2B 2db06eaf40ef90741aca5c329e096a82f259c5c068728338d798ba083ab7cd194f95cb54d0b2eee1257b15b8cce534a270adfd4b01b21ecab7245eb88b5b1bb5 SHA512 58efe74d17f2233f43c43d56eaabb849bc7753e27b3499544856036984504add5a50f4d6e1cf43af64a19695c1ef44cdd82514ce5126d50815b659e20bd93785 -DIST bio-0.5.3.tar.gz 103707 BLAKE2B 31c9e354ba33f20d6129a20d6272063498bfd4b4ea2cba9eddab8ede62ee894659eb5e6383ef022f5e003deab8bb3c92a98bcadae44db22e7b0346471cad5e4d SHA512 fbe09240a600abbcac952f52f05f28f9b305a1ae3def8b4144bd73bdb160acfbe5457086ef829057d5a73df1df5061668487b2ca5621df73628c8c4990b6b544 -EBUILD bio-0.5.3-r2.ebuild 1423 BLAKE2B 656c1291fb96b3aa6709a44394d1ba056ac7cd3fd6dcce27b9f11a486e6f646046e18dc7c804d11cb33202732b3eb753b84a8321d2a235048c29672fc4364e7f SHA512 0eac9b3802ccf73cddc16c59df089d49e3f042049229be1b7a3992410d44e118044008b240c1302b3e93183b63ee96fa1cfce096bd83c280ac819d45845162cf -MISC metadata.xml 1145 BLAKE2B 1b90a811913c7c6247ca1e2237a8d0ea8e0bd56f7e3310a5e61df90d6dadc365ed4a5c58829a94efe61f88c57270e7c715989f5b0ff02ad75395703e2d7bd596 SHA512 c91ebcc3b83ab7d9bbcaee0cff08cf212b3d77b1d2a34c70308d7bb3ff47f898668c1cb13c2e761ce25653bf167bce55fa9dd848d52e6ffd8e93021e173e8e7f diff --git a/dev-haskell/bio/bio-0.5.3-r2.ebuild b/dev-haskell/bio/bio-0.5.3-r2.ebuild deleted file mode 100644 index 9d49efd38d86..000000000000 --- a/dev-haskell/bio/bio-0.5.3-r2.ebuild +++ /dev/null @@ -1,64 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -# ebuild generated by hackport 0.3.2.9999 - -CABAL_FEATURES="bin lib profile haddock hoogle hscolour" -inherit eutils haskell-cabal - -DESCRIPTION="A bioinformatics library" -HOMEPAGE="http://biohaskell.org/Libraries/Bio" -SRC_URI="https://hackage.haskell.org/package/${P}/${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0/${PV}" -KEYWORDS="~amd64 ~x86" -IUSE="+examples test" -RESTRICT="!test? ( test )" - -RDEPEND=">=dev-haskell/binary-0.4:=[profile?] - dev-haskell/mtl:=[profile?] - dev-haskell/old-time:=[profile?] - dev-haskell/parallel:=[profile?] - dev-haskell/parsec:=[profile?] - >=dev-haskell/quickcheck-2:2=[profile?] - dev-haskell/random:=[profile?] - >=dev-haskell/tagsoup-0.8:=[profile?] - >=dev-lang/ghc-6.10.4:=" -DEPEND="${RDEPEND} - >=dev-haskell/cabal-1.6" - -src_prepare() { - epatch "${FILESDIR}"/${P}-ghc-7.10.patch - - cabal_chdeps \ - 'binary >=0.4 && <0.5' 'binary >=0.4' -} - -src_configure() { - haskell-cabal_src_configure \ - $(cabal_flag examples examples) \ - $(cabal_flag test test) -} - -src_test() { - dist/build/qc/qc || die -} - -src_install() { - haskell-cabal_src_install - - use test && rm "${ED}"/usr/bin/qc - # many examples collide with dev-haskell/flower - if use examples ; then - pushd "${ED}"/usr/bin - local example - for example in * - do - mv "${example}" "${PN}-example-${example}" - done - popd - fi -} diff --git a/dev-haskell/bio/files/bio-0.5.3-ghc-7.10.patch b/dev-haskell/bio/files/bio-0.5.3-ghc-7.10.patch deleted file mode 100644 index d570d22917a7..000000000000 --- a/dev-haskell/bio/files/bio-0.5.3-ghc-7.10.patch +++ /dev/null @@ -1,7 +0,0 @@ -diff --git a/Bio/Alignment/Bowtie.hs b/Bio/Alignment/Bowtie.hs -index 883b057..3e58f0e 100644 ---- a/Bio/Alignment/Bowtie.hs -+++ b/Bio/Alignment/Bowtie.hs -@@ -1 +1,2 @@ -+{-# LANGUAGE FlexibleContexts #-} - {-| This module provides a data type to represent an alignment diff --git a/dev-haskell/bio/metadata.xml b/dev-haskell/bio/metadata.xml deleted file mode 100644 index 8927e5f99073..000000000000 --- a/dev-haskell/bio/metadata.xml +++ /dev/null @@ -1,25 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>haskell@gentoo.org</email> - <name>Gentoo Haskell</name> - </maintainer> - <longdescription> - This is a collection of data structures and algorithms - useful for building bioinformatics-related tools - and utilities. - - Current list of features includes: a Sequence data type supporting - protein and nucleotide sequences and conversion between them. As of version - 0.4, different kinds of sequence have different types. Support for quality - data, reading and writing Fasta formatted files, reading TwoBit and - phd formats, and Roche/454 SFF files. Rudimentary (i.e. unoptimized) support - for doing alignments - including dynamic adjustment of scores based on sequence quality. - Also Blast output parsing. Partly implemented single linkage clustering, and - multiple alignment. Reading Gene Ontology (GO) annotations (GOA) and - definitions\/hierarchy. - - The Darcs repository is at: <http://malde.org/~ketil/biohaskell/biolib>. - </longdescription> -</pkgmetadata> |